rs38121241 SNP Detail

Summary

• ID
  rs38121241
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75828519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCTGAT CATTGTACCT
  CCCGCTCTGG GAATGGGAAA ACATCACTGG AGGCAGAACA GGGATGAGGT ACCTACTATG
  TCCTACCAGT ACCAGAGGGC TGAGAGTTAG GAGATCTTTG TCCCCCATAC TGACTCTATT
  ACCAGGTCTT GGGCACAATG CTTCAAATCT CATTTTGCTC ACTGGAAAAA TGAGCGATAC
  W
  TCTGTCTTTA ACTGCTGAAG AGGGAATATA GTGATGTCAA AATACTAGTC TGCACAGAAA
  CTCCAGAACT CCATGGAGGC ACATAGCTAC AGAGATCAGA GGTGGTATCT CAGAGTCACG
  ATACAAGAAA GGCATTCTGG GAGTCTTATA TACATGCAGC CAGGTCCAGA AGTCATTCTT
  TTCTTTTCTT TTTTTTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50571121	NES14070313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38121241					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50571121	NES14070313	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75828519 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	1302 bp downstream
Tssr78064	transcription start site region 78064	1942 bp downstream
Tssr78065	transcription start site region 78065	1920 bp downstream
Tssr78066	transcription start site region 78066	1875 bp downstream
Tssr78067	transcription start site region 78067	1842 bp downstream
Tssr78068	transcription start site region 78068	1804 bp downstream
Tssr78069	transcription start site region 78069	1753 bp downstream
Tssr78070	transcription start site region 78070	1708 bp downstream
Tssr78071	transcription start site region 78071	1654 bp downstream
Tssr78072	transcription start site region 78072	1639 bp downstream
Tssr78073	transcription start site region 78073	1569 bp downstream
Tssr78074	transcription start site region 78074	1515 bp downstream
Tssr78075	transcription start site region 78075	1506 bp downstream
Tssr78076	transcription start site region 78076	1461 bp downstream
Tssr78077	transcription start site region 78077	1366 bp downstream
Tssr81820	transcription start site region 81820	1298 bp upstream