rs38122477 SNP Detail

Summary

• ID
  rs38122477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:101691052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTTTTT AGACTAGGCT
  GGCCTCAAAC TTACAGACAT ACACCTGCCT CTGCTTCCAG AGTGCTGGGC TTAAAGTTGT
  ACACCACCAC CATCCAACTC TTTTGTATAT TTTTACATCT TTGTGTGATC ATTTGTATCA
  ACATTATTAG ACAGTAATTG AGATTTGAGT TGTATTTTAT GTTTGCATGC AAGGAACAGA
  R
  AGATCTACAA TTAGAAAAAC TTAAAAACTT TTAAGGAAAA GAAAATTTCC TATGAACCAG
  TACAGGAGAA GCTGCTTTAG AGTATTTTTA ATGTTTGTAT TCCTCCTTTG AGAATTTCAT
  ATAATATATT TTGATCATTT TCTTTCTCCT CCCCCAACAC CTCCCAAATC CCCATACCTC
  CCTGCCCAGC CAACTTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142153	NES14336217	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38122477					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142153	NES14336217	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:101691052 () rs orientation: forward

Symbol	Name	Function Class
Gm36475	predicted gene, 36475	within coordinates
Gm47533	predicted gene, 47533	within coordinates
Rr485081	regulatory region 485081	842 bp distal
Tssr4154	transcription start site region 4154	1433 bp upstream