rs38122761 SNP Detail

Summary

• ID
  rs38122761
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135398771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAAAGC CTGAAAGCTC
  TGGTGAAACA ACAAAGTATA AAGTGTTTGT CTTTCCTCTG AGGACTAGGT GGGATGGGGA
  AAACTCTACA GTCTGCAAGG TGGGGCAGTC CCATTGTCAA AGGCACATAA ATAAGACTGT
  TACAAAGGTA GAGGCAATGG GATATACTAC TAGAACACAA GTTGAAGACT GTTCATCAGC
  R
  AGAAGTATCT AGTTAAACTT CAAGCTCCAA ATGATCCCAT GGGATATACC TAAAACAGAA
  GCCTGTGTGG GAAGCAGGTA GACTAGGCTC CTATGTCTGT GGCAACAGAA ACCAATGTCA
  GGGATTTGTT CCTTCACAGT CCTTGCTGCA AGAGGTCTGA CATTCAGATG TGGTTGCCAA
  GGCCACACTC CACAGAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51649031	NES14653477	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38122761					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649031	NES14653477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135398771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	1030 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	1463 bp upstream
Rr585767	regulatory region 585767	974 bp distal
Rr585768	regulatory region 585768	20 bp proximal
Tssr35825	transcription start site region 35825	1754 bp upstream
Tssr35826	transcription start site region 35826	1739 bp upstream
Tssr35827	transcription start site region 35827	1697 bp upstream
Tssr35828	transcription start site region 35828	1640 bp upstream
Tssr35829	transcription start site region 35829	1603 bp upstream
Tssr35830	transcription start site region 35830	1593 bp upstream
Tssr35831	transcription start site region 35831	1531 bp upstream
Tssr35832	transcription start site region 35832	1499 bp upstream
Tssr35833	transcription start site region 35833	1446 bp upstream
Tssr35834	transcription start site region 35834	1029 bp upstream