rs38123670 SNP Detail

Summary

• ID
  rs38123670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41286997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC CAGATCAGAT TAGAACACAC
  Y
  AGACTTGGTT GCTTTGGTTC ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss50700305	NES14258802	PERLEGEN	MM_PANEL2	f	SNP		C		T	T	C
ss136353020	ENSMUSSNP1123095	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322925105	CHEV_9_41183784	CHEVERUD	SCREENING_POP	f	SNP			C				C
SNP Consensus Information
SNP					Consensus Type	A/J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs38123670					SNP	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50700305	NES14258802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41286997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	547 bp proximal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	825 bp upstream
Rr677030	regulatory region 677030	217 bp distal
Rr677031	regulatory region 677031	229 bp proximal
Tssr84498	transcription start site region 84498	691 bp upstream
Tssr84499	transcription start site region 84499	711 bp upstream
Tssr84500	transcription start site region 84500	765 bp upstream
Tssr84501	transcription start site region 84501	787 bp upstream
Tssr84502	transcription start site region 84502	1197 bp upstream