rs38123699 SNP Detail

Summary

• ID
  rs38123699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:103680343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGAGACA CTGAGCAAGT
  CAACAAACGT AATTATTTGT TTATCCTCAC AGTCCCCATC TTATGTTTCT GCCATGACTT
  GCCTTTTTAA TAGACTATTA TTTGAAAGGA ATGCTTCCCA CTTCCATCTA ACTTTTGGCC
  ACCGTGTTTA TGATAACAAC AGAATGAAAC TAGAACAGTA GTGAACAGTG AGAAGTTTTC
  M
  CCCTACTTCA GAAAGCAGTG AATAAATACT TTTTGTTATA GCAGAGGACA GTTGCTATCA
  AGGAAACTCT CATTTGCAAT AGTGAGCAAG GCAATTCAGA GTACACAAGA TGCTTTATGT
  CCATTTTGCT ATTAGCTCCA AAGTAGGTCA GAGAACCTAG ATACAATTAT CTTTGAAGAA
  AATGTATCAA TGAGTCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51329688	NES14482938	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38123699					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51329688	NES14482938	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:103680343 () rs orientation: forward

Symbol	Name	Function Class
Rr371795	regulatory region 371795	within coordinates