rs38123945 SNP Detail

Summary

• ID
  rs38123945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41033474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTGCAC TCATTCACAT
  GTGCACACAT ACTGATGTAC ACTCATACAC ATGTGCACTC ATTCACATGT GCACATATAC
  AGATGTGTAC TCATACACAT GTGCACACAT ACACAAAGTT AGCACTTTTT CCTGCTCCTC
  TCCTGACAGT GATAACAAGT CATGTGTGGT CTACAGAGGC TGGGGCATGA GATCTGCATG
  W
  CAGAGGCTGA ACTGTGTGGG TTCCTGAGGA GACACCGAAC TCAGAACAGC TTGATAATCA
  GTCGCCTTGT CACCGTGGCC TTGCAGCAGT GCGCTGTCTC CTCGTTTGCC GAGATAATAC
  TAATTTTTAT TGCTGCAATG TACAATTCAC CCACAAATAA CTAGGTGGCA ATATCACCTA
  AATTTACACA TAGGTGGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51242052	NES14285446	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38123945					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242052	NES14285446	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41033474 () rs orientation: forward

Symbol	Name	Function Class
Gm70541	predicted gene, 70541	381 bp downstream