rs38125474 SNP Detail

Summary

• ID
  rs38125474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108573767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTGTCT TGGATTCTAG
  ATTAGCTTTC CATGTCTTGT GAGAGTCACT TAAGTTCTGA CCTAGTACGA TGAGTTAGCA
  TGTAAAGGTG CTTGCAGCTA AGACTGAGAA CCTGAGTTTG AACCCTGGCA CCCACGTGCT
  GGAAGGAGAG AACCGACTCC TACAAGTTGT TCTCTGACCT CACACAGATG CACACACATC
  Y
  CAGTAAATGT AATGGTGTTC TAAGAGTCAT GGAGTTGTAG AAGTTATAAA AGCTGCTGTG
  ATGGCTTGAA GGAGGATGAT CCCTACAGGC TCATATAGTC GAATCTTTGG GAACGATTAG
  AAGTGTGGTG GCCTTGTTGG GAGAAGTGTG CCACTGGGGG GTAAGCTTTG AGGTTTTTGA
  AGCCCATGCT ATTCTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51047873	NES14373005	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38125474					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51047873	NES14373005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108573767 () rs orientation: forward

Symbol	Name	Function Class
Evl	Ena-vasodilator stimulated phosphoprotein	within coordinates
Rr472571	regulatory region 472571	1732 bp distal
Rr472572	regulatory region 472572	726 bp distal
Tssr114987	transcription start site region 114987	1694 bp downstream
Tssr114988	transcription start site region 114988	565 bp downstream