rs38127021 SNP Detail

Summary

• ID
  rs38127021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20179990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCGACGT ATATCTTCAG ACCTGGTGTC GTCCGCCACG
  TTCCTGACGA ACAAAGACGT GTTGGGGGGG GGGGGGGCGC AGGTATCAGG ACATGGCGGC
  R
  GCGGGACTCT GGGCCGGCGG CGCTAACGAG CTCGGGCAAA CCGGCGGCGG CTCACATCCA
  CTCACATCAC ACTCGCACAG ACGCAGAGGG CTCCGCTACG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51078865	NES14360365	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38127021					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51078865	NES14360365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20179990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5307	CpG island 5307	within coordinates
Gm5446	predicted gene 5446	16 bp upstream
Gm60857	predicted gene, 60857	within coordinates
Rr388071	regulatory region 388071	1340 bp upstream