rs38129027 SNP Detail

Summary

• ID
  rs38129027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:79518172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTACTC TGTCTTTTAT
  TCTCAGCACT TTCACCAGCT ATGTATGCCC ATTTGCATAG ACAGCTCTCA TTCTGCATTG
  ATTGAAGCTT CTTTTAATGC ACTAGGCATC TGGCAATACA TACATTTTTT TTTTTAAGCC
  AAAGGTACAG AGTAAATGCA GAAGTAATGG TCAAGAATGT AGGACATCAG ACACCGACAC
  Y
  GTGGGTCTAC ATTAGAAACA TGGCTGCAAA CAGGCTAATG GGTTTTTGTA GAAAAACCTC
  AGTGTTCCTA AAGGCAGCTT GTTCCGTAGT AAATCCTAAG GACCCTGCTC GCTGTGGTTG
  CAGGCCTTCT CTTAGTTTGT TGCATAAGAA CACACCACAT TTCACATCGT TTCTCCAGTG
  TAAATTACTT CATACCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51708325	NES14814350	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38129027					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51708325	NES14814350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79518172 () rs orientation: forward

Symbol	Name	Function Class
Gm6261	predicted gene 6261	19 bp upstream