rs38129518 SNP Detail

Summary

• ID
  rs38129518
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3492689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG AAAGAGTGGT CAAATCACCC
  R
  CTCACCAATT CACCAGTGTG CTTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50589664	NES13657860	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	A	G		G	A	G	G		A
ss146002444	ENSMUSSNP5745408	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss325715147	CHEV_19_3442689	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38129518					SNP	G	G	A	A	A	G	A	A	A	A	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50589664	NES13657860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3492689 () rs orientation: forward

Symbol	Name	Function Class
Rr364729	regulatory region 364729	890 bp distal
Rr542416	regulatory region 542416	1193 bp distal
Tssr157389	transcription start site region 157389	1782 bp upstream
Tssr157390	transcription start site region 157390	1413 bp upstream
Tssr157391	transcription start site region 157391	1385 bp upstream