rs38129862 SNP Detail

Summary

• ID
  rs38129862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAAAGCA GAGATATGGA AAGGAACATC TGGGGTATGT
  AGCTTGACCT TTTTGTGGTC TCTAAACCTC CTAGCCTGTC AGGGTAGTAT AGCTGACTGT
  R
  TCACATGATA CCTCCTAGCC TGTCAGGGTA GTATAGCTGA CTGTATCACA TGATACCTCC
  TAGCCTGTCA GGGTAGTATA GCTGACTGTA TCACATGATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50673621	NES14003015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38129862					SNP	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50673621	NES14003015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	1616 bp distal
Gm46107	predicted gene, 46107	939 bp upstream
Nrgn	neurogranin	1760 bp upstream
Rr676716	regulatory region 676716	1612 bp distal
Rr676717	regulatory region 676717	1156 bp distal
Rr676718	regulatory region 676718	within coordinates
Rr676719	regulatory region 676719	652 bp proximal
Rr676720	regulatory region 676720	915 bp proximal
Tssr84410	transcription start site region 84410	1109 bp upstream
Tssr84411	transcription start site region 84411	1132 bp upstream
Tssr84412	transcription start site region 84412	1140 bp upstream
Tssr84413	transcription start site region 84413	1166 bp upstream
Tssr84414	transcription start site region 84414	1188 bp upstream
Tssr88858	transcription start site region 88858	1794 bp upstream
Tssr88859	transcription start site region 88859	1764 bp upstream
Tssr88860	transcription start site region 88860	1523 bp upstream
Tssr88861	transcription start site region 88861	1108 bp upstream