rs38130081 SNP Detail

Summary

• ID
  rs38130081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15778618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGAAGTGG AAGATTTCAA
  CAGCGCCTAC CTGCCCATTG TTGTGCTGAT AGTTCCTGAT ACTGCCCTTG TAGGGATGGC
  GCATATGTCC TGCTAGAGAA GGACAATTAG TCAGGATCAG TCTATAACTA GGTATTTGTT
  TCATTCCTGA CCAACAGCCA AATTTGGTCT CAGATCAGCC TGAAATGTCC CTAATGGTGC
  R
  TCAGAGAGCC TTCCTGCGGG GTCCTGGTAC AGCCCACCAG CAGGTCAGCC AGACGACACA
  GGGCTGGACT CTCTTTCCCA AGCTAATTCA TCTACACCGG TAGCACTTTA AAAATCAACT
  CAGAGACCGG TCTTGCAGCA GATGCTTTTT CCGCCTGCAG AAGATGAATG TGAAGAACCA
  CAGCTCCCTT GTTCTCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50640800	NES13617957	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38130081					SNP	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640800	NES13617957	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15778618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	794 bp proximal
Gm50348	predicted gene, 50348	1804 bp upstream
Gm54054	predicted gene, 54054	within coordinates
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	within coordinates
Rr544632	regulatory region 544632	783 bp proximal
Rr544633	regulatory region 544633	1193 bp proximal
Rr544634	regulatory region 544634	1815 bp proximal