rs38130124 SNP Detail

Summary

• ID
  rs38130124
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:44389783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCACTGA TGTGGCTGAC
  AGTGGTGTCC TATAGGCTGC AAAATTGGCT TCTACCTTGA AAACTTTGTA TCAGGAGTTT
  TGTTTTTGTT TTTGTTTTTT GTTTTGTTTT GTTTTGTTTT TGCTTTAGTG AATCACAAAT
  AATTAGCCAC ACTGTTGTAC TGAGACAGCA TCCATTAGTC CTCAGGGATG CAAGTTAACA
  S
  GAGAGGACCT ATGCAAGCAT GTGTCTTAGC TGACAGATGG TTTTCTCAAA ACAATTCCTA
  GGACATGTGT GTGTGTGTGC GCGCGCACAC GCATACATGT AAGTGTGCAA AATAGATGAT
  TGAGACTAGA ACAGAGGATG GAATTTCCAG TGATAGCAAG AAGTGTTCTC CAGAAAAAAT
  GGTAGAATAT GGCAGATCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51099416	NES13872067	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38130124					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51099416	NES13872067	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:44389783 () rs orientation: forward

Symbol	Name	Function Class
Gm35959	predicted gene, 35959	within coordinates
Gm42984	predicted gene 42984	within coordinates
Gm72570	predicted gene, 72570	483 bp downstream
Rr610954	regulatory region 610954	1553 bp proximal