rs38131315 SNP Detail

Summary

• ID
  rs38131315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69627844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAACTGC CCCTTAGCTA
  TAACTTTCAA ATATGAACTT CATGCCCAAT CCAAAAAGGA AATCCTCCCA CTTCTATTTG
  ATAAGATGAA TTCAAATTTA AACCCTCTTC ATTGGGGAAC AAAGACCCTC TACTGTCATA
  GGGTCCTGGA GTCCAATTAG AGTCATTAGC CTAAATTGGA ATAGTGTGAT CCTCTAGATA
  K
  GCCACTTGGC TAAAGGCAGG CTTAGTAAGA AAAATTCTTT GCCTCATTTA CCTGAATAGT
  GCCGACGGTT AATATGAGTG CAGGAGCCCA CAGAAGATAG AGGCATCCCC CTGGAGTTGA
  AGTTATAAGC CATTCAAAGA TGATAATACG GATGCTGGGT ACTGAACTCT AGTGTTTTGC
  AAGAATAATA GTATGGACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50978982	NES13929386	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38131315					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978982	NES13929386	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69627844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13262	CpG island 13262	1202 bp proximal
Nmd3	NMD3 ribosome export adaptor	1510 bp upstream
Rr77744	regulatory region 77744	956 bp proximal
Rr397719	regulatory region 397719	1324 bp upstream
Tssr29546	transcription start site region 29546	1485 bp upstream
Tssr29547	transcription start site region 29547	1578 bp upstream