rs38131700 SNP Detail

Summary

• ID
  rs38131700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10983416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGTATA GAGAAGAGCC
  TCTTGGGGAA GAGCAGCCCA GGTCTGGGAT GGAAAGTTCA GGGTTGGGGG CTGGAGCATA
  TGCCAGGAAG GAACTGAGGG GTGCTGCGAG GAGGACCTGG AGCCAGGTCT ATTTTGATAT
  GTGATATATG CACCTCAGTC CTTGTCCCAG GAGCAAACAA AAACAACAAC CACAAAACAA
  K
  TGATTGCTTT CCTCTAAAGG TGTCATGGAG AAACTCCAGC TTGGGCCAGA GACTCTACTG
  CAGGACAATC CAAAGCTCAT CTATGCCAGG CTGAGCGGAT TTGGCCAATC GGGAATTTTC
  TCCAAAGTAG CTGGCCATGA CATCAACTAT TTGGCTTTAT CAGGTAGGTT TGAAAGGCTT
  TTCTAAAATA ATTTGAACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51577108	NES14605676	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38131700					SNP	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577108	NES14605676	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10983416 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	within coordinates
Cpgi6946	CpG island 6946	1184 bp distal
Gm34315	predicted gene, 34315	1697 bp upstream
Rr311562	regulatory region 311562	15 bp distal
Tssr130700	transcription start site region 130700	1565 bp downstream
Tssr130701	transcription start site region 130701	1525 bp downstream