rs38132307 SNP Detail

Summary

• ID
  rs38132307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26384395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTAGGA TCTCTAGTGT
  TACTTCCTTC TGAAATATCC CCGTTCCTCC TTTAGCTAGA AGGATTGTAA AGACTACATG
  TAGAAGAGCA GGCTTACAGA AAACAGTTAC TCCTTTTAAT CACTCCGTGC CATCAGAAGG
  CCTGAGCAAT GATTAACTTC CACATTCTCT GTGAATCACT CCATCACTAG GCAGTGCAAG
  R
  AGACTGAGAT CCATTCTCTG CCAAGGGCAC AGTAAACTTA ATGGGGTTTT GCATTTTGCA
  TTAGATATTC TAAATACACA CATGGTCTTC GCTGCTCAAC TCATTTCCAA AGAAAACTGG
  CACTCTCTTT AGGTTGTAAT AGCTGACTAC GCTCAGAAAT TTTATAGATT TTGTACTCAA
  GCACACACAC ACACATACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51444678	NES14435721	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38132307					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444678	NES14435721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26384395 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	904 bp upstream
Cpgi13015	CpG island 13015	1048 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	791 bp downstream
Tssr32830	transcription start site region 32830	1254 bp downstream
Tssr32831	transcription start site region 32831	1560 bp downstream
Tssr32832	transcription start site region 32832	1584 bp downstream
Tssr32833	transcription start site region 32833	1608 bp downstream
Tssr32834	transcription start site region 32834	1658 bp downstream
Tssr32835	transcription start site region 32835	1688 bp downstream