rs38132343 SNP Detail

Summary

• ID
  rs38132343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58810061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCCCCT AAACTTTTTA
  TGTTAAGAGA CTGTGTGTGC TGAAAGAAAA CATCTGTCAG AATATTGTGC AGTATAACTC
  TGTAGAAACC TAAAGAATCA CATCTGATTT CTCTGATAAA AACTAAGAGA TCACTGTAAT
  TCTTCTGCCC AGATACAGAC AGCCAACGTT TCCCTCTGGG TGGACTGGGA GAGTACCAAT
  K
  TGGTGGCCAG TGGGTAGGAG AGGAATTCTT TGGAAGTCTT TACAGTGAGG CTGGCAAGTC
  CATTACCAGT GCTCTCCACA TGCTGCAGTC CCATTATAGA CAACACAGTA AAACCCTTGG
  CTCGGGGAGA GTTACCTTTA GGTGTTCTGA ACTGTACAGC TTCAGACATG GGCCCCATGC
  CCTTTGAGTT CCGGGCCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52021351	NES15034451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38132343					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52021351	NES15034451	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58810061 () rs orientation: forward

Symbol	Name	Function Class
Neo1	neogenin	within coordinates
Rr196035	regulatory region 196035	within coordinates
Rr212064	regulatory region 212064	420 bp proximal