rs38134272 SNP Detail

Summary

• ID
  rs38134272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102057906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCCCTAT CCAATGTATA
  CCAGGTCTCC TGCTTTCCAC ATCTCAAATG TTTTTTTTTT TTTCTTTTTC TTTTTGGTTG
  TTGTTTTCTC TCTTTTTTTT TATTTACTCA CAAGGTTGGC TTCCTCTCCA GGTTTGAGAA
  CCTAAGGGTT TTATCTTTTG CTGCCTATTC ACTTAGAATT TCCCTCGCCA TAAAATGATC
  R
  GCAAATGTTC GTTTTCCGTA ACTCTGATCA CTGCCTCTCA TTGCCCTCCT CCTCTATCAC
  ACGTCCCCTG ATTGTCACAG GAACATGTGA GATTGCTGCA AAATCAAATC AAGATCGAAG
  ATGTTCCCTG GGAAGTAAAC AGACCTTAGA GCTAAGATAC TCACATCAGT CAGAGAAACG
  GTATACAACG GGAACCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51587504	NES14668408	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38134272					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587504	NES14668408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102057906 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	284 bp distal
Rr582192	regulatory region 582192	1609 bp proximal