rs38135601 SNP Detail

Summary

• ID
  rs38135601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98154213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTATGCT GGGAGCGTTG
  TCCAGAGCTG GTTTCTGGAT GGTCTGTTTT ACTGGCCTCT CGGGTTCCTG TCCCTTCTCT
  TCCCTGAGTT TGGAGTTTGA ACTCTTCTCC TCTGCTGGCC TAGGACTGGT GTCTTCCTTT
  GTAGGCCGTA CTCTGTTGTA ATCTTTTGCC TTGATCCTGG CTTCATCCCT GGCTCCGATA
  Y
  GCACCTGTTC CCTGGCCTTG GCACGCTCCT GCTCCTTGGC TCTGACGTAC TGCTGCTCTT
  TGGCACTGAC AAACTCCTGT GCCTTGGCCC TGACCCAGTC TTGTGTCCTG GCTCTGGCAT
  GAGCCTGTTC CCTGGCTCTA GCACGAGCCT GTTCCCTGGC CTGAGCCTGT TCCCGGGCTT
  TGGAACGCAC TAGGTCCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51761484	NES14553599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38135601					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51761484	NES14553599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98154213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	431 bp proximal
Gm62000	predicted gene, 62000	936 bp upstream
H1f7	H1.7 linker histone	within coordinates
Rr311340	regulatory region 311340	within coordinates
Rr391174	regulatory region 391174	1132 bp upstream
Tssr136230	transcription start site region 136230	964 bp downstream
Tssr136231	transcription start site region 136231	1077 bp downstream