rs38137775 SNP Detail

Summary

• ID
  rs38137775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60990190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAACGCCT CTGGGTAGGG
  TAGGAGAGCT CAGTAGAGCA AAGAAAAGAT GAAAGAGATG AAGGAGGAGG GGAAGACAAG
  GAAGAGAGAA TGAAAGGACT GCAGCCCCAT TTGGCCGCAT ACTGAATACC TCCTGGGAGT
  CCAGCCAGAT CCCATGGACA GCTCCTGGGT TTTAAGTGGC ACTCTGCTGC CACAGGTCTG
  R
  AACATAGGAG CCAGTCTGCC TGTTTCCCTC CCTCCCTCCC TCCCTCCTTT CCTTCCTTAT
  TTCTGTCTTG AGACAAAGTC ACCTATAGCT CAGGCTGCCC TTGAACTCAA GAATGACCTT
  AAACTTATGG TCCCTCTATC TATCTCTCTG GTGCTGAGAT TAGAGATGTG TCACCATGAC
  TGGTTGATGC AGCGCTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52025166	NES15041741	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38137775					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025166	NES15041741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60990190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21877	CpG island 21877	1025 bp distal
Gm34004	predicted gene, 34004	within coordinates
Rr204410	regulatory region 204410	within coordinates
Rr209953	regulatory region 209953	391 bp distal
Rr209954	regulatory region 209954	1811 bp proximal