rs38138806 SNP Detail

Summary

• ID
  rs38138806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17103573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC ACACGCTGGG CACTGGGGAA
  R
  AAGGATAGAC TAGGGGAGCA AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50627356	NES13609077	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A		G	A	A	G		A
ss146100422	ENSMUSSNP6550755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss325726634	CHEV_19_17200699	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38138806					SNP	G	G	A	A	A	G	A	G	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50627356	NES13609077	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17103573 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	539 bp downstream
Tssr158489	transcription start site region 158489	730 bp upstream
Tssr158490	transcription start site region 158490	667 bp upstream
Tssr158491	transcription start site region 158491	611 bp upstream