rs38139183 SNP Detail

Summary

• ID
  rs38139183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121315477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGGGT TTCACTGTGT
  AGTCCTGGCT GTTTGTCCTG CACCTCCCTC TGTGGACCAA GCTGGCTTCA AACTCAGAGA
  TCTTCCTGCC TCTACCGCCT CTAAAGAGTG CTGGGACTAC AGGCGTGCGC CATCACTACA
  GCCCCCTCCC CGTACAAGCC CGCCCACCCG GGCCCGGGAA TGCTCACCCA CATCCATCCA
  Y
  TCCGGAGGTA ACAGGCGGCA CTTCTGTCTC TGTTTCAGGT TAATGGCCAG CCACAGGGGC
  ACGTCCACGG GTAAGCCGGG GTTGAAGGGC CCCAGGTCCC CCTGCAAGGA CAACGCAGAC
  CCCAGGTGGA AAGGAGCGGT GACCCGAGCA TGATCCCAGG CCGCCGCCCC GTACCGCCCT
  GGCTCACCCC GATCAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51983401	NES14995663	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38139183					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983401	NES14995663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121315477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	within coordinates
Gins2	GINS complex subunit 2	within coordinates
Gm10614	predicted gene 10614	762 bp upstream
Rr401181	regulatory region 401181	199 bp upstream
Rr671590	regulatory region 671590	556 bp proximal
Rr671591	regulatory region 671591	778 bp proximal
Rr671592	regulatory region 671592	788 bp proximal
Tssr83202	transcription start site region 83202	281 bp downstream
Tssr83203	transcription start site region 83203	321 bp downstream
Tssr83204	transcription start site region 83204	333 bp downstream
Tssr83205	transcription start site region 83205	343 bp downstream