rs38140589 SNP Detail

Summary

• ID
  rs38140589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32628499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACATGCA AGACTGCTTT TAGGGGGAAC AAGAGGCCAC
  TGTGAATGAT TGCATTAAAC GGGGAGTTTA AAAAGCTGGA CAGAGGGGTT ATCAAGCAGG
  R
  AGGATAAAAG CTGAAAACCT GCTAGCCGAA GGATCAGTAA TGCAAGGGCT TTGACTGACA
  GAGCCAGGTC TGAAGGACAC AGCTCCTAAG CAGGCATCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50669227	NES14013659	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G		A	A	G	A	A	A
ss136250162	ENSMUSSNP6925927	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38140589					SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50669227	NES14013659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32628499 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	62 bp upstream
Rr676235	regulatory region 676235	1629 bp distal
Rr676236	regulatory region 676236	671 bp distal
Rr676237	regulatory region 676237	133 bp proximal
Tssr84287	transcription start site region 84287	442 bp downstream
Tssr88694	transcription start site region 88694	905 bp downstream