rs38141139 SNP Detail

Summary

• ID
  rs38141139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61329780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAACTCT AGGACAGAGT
  CCAGTGTGGA TTTTATCAAC ATAACCACCA GAAATGCACA TTTTCTACCC TGAAGCTTTT
  ACTGGAAACA TGGAAAGCTA TTTCCCACAC AGGCAAGCAG GCGTGCTCTG TCACTAGGAG
  AACCACAGGG GCAGCTCCTG GAGTTCGCAC GTGTAAAATG TCTGAAAGCA TTCCACCTCA
  S
  TAGGTTCCTT ACACAGAGTG CTTCCCATAA ATATTTTAAA TTGTTTTGCA CGTAAGAACA
  GGCTAAAAAT GATTTTACAC TTCAGAAACT GTTACTTTAA TAACTTGGCT AAATGTTTTA
  ATCTCATGTG AGTCCTCTAT TCCGCACTTG GGAGAACTTT TCTTACCTGT TGAAGTCCTT
  TTCTGAAGAA ACTACTCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413740	NES13453080	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38141139					SNP	C	C	C	C	C	G	C	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413740	NES13453080	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61329780 () rs orientation: forward

Symbol	Name	Function Class
Rr356345	regulatory region 356345	1698 bp distal
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	146 bp downstream
Tssr153542	transcription start site region 153542	477 bp upstream
Tssr153543	transcription start site region 153543	310 bp upstream
Tssr153544	transcription start site region 153544	151 bp upstream
Tssr153545	transcription start site region 153545	997 bp downstream