rs38141876 SNP Detail

Summary

• ID
  rs38141876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58667578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGCTGAG GGCATTTTCC
  TGCGTCGGTT TTCTTCACAT GCCAGATACC TGGCTAAATC TTAATGGCCA ACTGGGCCAT
  TTTCTCTCCC TACTGATTCA CATTCTGAGA TGTGAGCATG TGCCAAGTGA TGCTAAGGAA
  ATGGAGAAGG GTTTGAATTT TGAGCCTCAG AATGGAACCT GTAGTGCCTG GCAGAAGTTA
  R
  CTGTCATTTC CTGTTCTTAT GTGATCTCTC TGAAATAAAT TCTAATCACC TAGCAAGAGA
  GTGGATGTTT TAGAACAAAC AAAGCCAGTT AGAAAGGCAG AGGGGAAAGG ATAAATACAT
  ATATACCAAT TATCCTATGT TGTGGCTTTT ATAGTTTTGC GCCATTTAAT AATGAAACTG
  AAGGCTTAGC CTGAGGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50903985	NES13492641	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs38141876					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903985	NES13492641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58667578 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr157278	transcription start site region 157278	1996 bp downstream
Tssr157279	transcription start site region 157279	1978 bp downstream
Tssr157280	transcription start site region 157280	1929 bp downstream
Tssr157281	transcription start site region 157281	378 bp upstream
Tssr157282	transcription start site region 157282	396 bp upstream
Tssr157283	transcription start site region 157283	598 bp upstream
Tssr157284	transcription start site region 157284	888 bp upstream
Tssr157285	transcription start site region 157285	1588 bp upstream
Tssr157286	transcription start site region 157286	1659 bp upstream
Tssr157287	transcription start site region 157287	1676 bp upstream