rs38143248 SNP Detail

Summary

• ID
  rs38143248
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88529949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCAGAGAG GATAGGGTGA AGGCTATTAC TGTCCTGCCT
  TCAGACAGCA CAAGCCAAGC TGTGCCCAGA TCCCTACGGA AACCAACTCA CTGTTCGACC
  W
  GCTGCTGCTC TCTCGCCCTC TCTGGTCTTA GTTTTGGCAA CAGCTCATCA GGGCTGAGTA
  TCCTCCAAGC AGACGCTAGC AGGACCCTGG AGTCCTCGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50598751	NES14052503	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38143248					SNP	T	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598751	NES14052503	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88529949 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	1069 bp downstream
Tssr82325	transcription start site region 82325	1090 bp downstream
Zfp423	zinc finger protein 423	within coordinates