rs38143293 SNP Detail

Summary

• ID
  rs38143293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCAACA TGGCTTCAGG
  TGACAGTCTA GACCAGGGAT GTCTACATCA GAAGCATACT TTTTATAATC TTACAGATTC
  ACTATCTCAA ATTTAAAATG TCACATATTT TAAAAATAAT TGCAAGGATA GTTGACGAAA
  TACTCACTGA GAACATTGAT TTCAGACAAA ATCATTTTCC TGTGACCCTT CACATTTACA
  R
  AATTGGGAGG TGCTATTTGA GCAGAATTAT AATTTAATAA GTGCAGAGAC AGAGTTCTGT
  TTATCTTTGG GTATCTATCT TCTTAGGAAA CAAATAACAA CAGCCAGAGT CCTGGAGAGA
  TGGCTCAGCA GTCAAGAGTA CTTGTTCTTG CAGAAGATCC AAGTTCCATT CCCAGAATCT
  ACTCGGTGAC GTATAACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss50454693	NES14115475	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	A		G		G
ss145647255	ENSMUSSNP3301234	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322398751	CHEV_7_117910250	CHEVERUD	SCREENING_POP	f	SNP							A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs38143293					SNP	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50454693	NES14115475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365943 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1470 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1347 bp proximal
Rr653308	regulatory region 653308	1057 bp proximal
Rr653309	regulatory region 653309	1685 bp proximal
Tssr68503	transcription start site region 68503	1327 bp upstream
Tssr68504	transcription start site region 68504	1370 bp upstream
Tssr68505	transcription start site region 68505	1402 bp upstream
Tssr68506	transcription start site region 68506	1433 bp upstream
Tssr68507	transcription start site region 68507	1879 bp upstream