rs38144793 SNP Detail

Summary

• ID
  rs38144793
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190549689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAAATT TTTATAAATT
  TTTAAGGTTT TTAGAAAAAA ATTACCAAAA GCAATAAATA AATAGATACA TAAACAAACA
  AACAAACAAA CAAACAGAAT GATACCAAAA CCATCCTCTA AATAGAGTCT CAAAACGTCA
  ACTGGTGACT GGGTTTGTGT TAATTTCAAT CTCTTCTTCT AGATTCGTAC TTATTTGCTG
  K
  GCACGGGTGT TTTGCCTGTG TGTATACATG CATGTGCAGT GCCCAGGGAA GCCAGAGAAC
  ATGCACACTG CAGGCTTGCT AAGAGCTGTG GTAGGCACTG CTTCAGCTGA GGCTCCTCCT
  CTCCAGTGAC TGTAGTGTGT GTCAAGTTGA CATAAAACCA GCCAGCACAC AAAGTCATAA
  AAAAAAAAGA TTGATAAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51425146	NES14447675	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38144793					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51425146	NES14447675	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190549689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70960	predicted gene, 70960			within coordinates
Rps6kc1	ribosomal protein S6 kinase polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr425988	regulatory region 425988			1018 bp distal