rs38145888 SNP Detail

Summary

• ID
  rs38145888
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4839590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGTTCAA GGATGAATGT
  CAACCAGGCT TAGTGACGCA TGTTTGCAAT CCTAGCCCTC TAGAAACAGA ATCAAGTTCA
  AGTCTAACTT AGAGTATGTA GTATTTTTCT AAAAAAAAAA AAAAAAAATC CTGTGCTTAA
  TGGCGATCCC TTTCACTAGC ACATCGGTCC ATATATCCCT TCTTCCGTGC TGGCCATCAA
  M
  CATAAGAAGT ACTGTTATCC ACACAATTTT GCTGGCAAGA TAACTGAAGC TCACAAGAAT
  TCCTGGCTAA CTTGGTTTAT GCACCAAGGA CCAAGCCCTT CAAAACTCCT TCCTTAATCC
  ACTTTGCTCC CATGTTCAAC ACTGGCTTGT GACTGTACAC TCTCAGCAAC TTCACTCTGT
  GTATAATATA CCAAAAAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ
ss50908954	NES13484808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ
rs38145888					SNP	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908954	NES13484808	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4839590 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1764 bp upstream
Rr407421	regulatory region 407421	697 bp distal
Rr407422	regulatory region 407422	804 bp distal
Rr407423	regulatory region 407423	591 bp proximal
Rr407424	regulatory region 407424	688 bp proximal
Tssr5799	transcription start site region 5799	1727 bp upstream