rs38147461 SNP Detail

Summary

• ID
  rs38147461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83688111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGTCTC CCATTGCCAG
  GCTCTAAACA CCGCCCCACG CGAGGAGGCG CGAAGACACC ATCCCCTCCC CCTTCTCCAC
  ATATCTCTTT TCCTCCTATC CCTCCTCCTT CTCCTCTTTC CCTCCCCTTG TCTCTCTTCC
  CCTCACTCCC TCCTCCTTTT TTCCTCCCCC TGAACGAACT CCCGTTGCGC TGCGCCTACT
  R
  GATCCACCCA GAGTCCTGGA ACCCCAGCTC GCGCCCAATC GCCGACGGGG GCGGGGCCTG
  TAGGGGGCGG GGCAGATGGA GGAAGGGGTG GGGAGGGGCA GGGAGGGACC TGCTACCCTG
  AGCTAGGACT AGCGGCTGCT GTGGCCCAAG CAGCAGTGGC GGCGGGCATG GGCGATGGGG
  GCGCGGAGCG GGACCGCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss51352653	NES13742476	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs38147461					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352653	NES13742476	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83688111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	within coordinates
Gm32943	predicted gene, 32943	1669 bp downstream
Gm55235	predicted gene, 55235	197 bp downstream
Rr632917	regulatory region 632917	208 bp distal
Rr632918	regulatory region 632918	604 bp distal
Rr632919	regulatory region 632919	within coordinates
Rr632920	regulatory region 632920	1062 bp proximal
Tssr57361	transcription start site region 57361	103 bp upstream
Tssr61702	transcription start site region 61702	264 bp upstream
Vax2	ventral anterior homeobox 2	135 bp upstream
Vax2os	ventral anterior homeobox 2, opposite strand	within coordinates