rs38147742 SNP Detail

Summary

• ID
  rs38147742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:42112820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCAGTT AGTGCAAGCA
  GTGAAGACTC ACTCACCATC TCAGACCGGA GGATCTGTTC AGACTATGAG GGGAAGATCC
  TAGAGAGAAA CTTGTAGTGA TGGCTTTAAA GCCGGGTAGT TTACCTGGGT CCCCCGAGGC
  TCACTATTCC TGGGCTGGCA GTGACGTGGG CAGAGGTAGA TGGTCAGAGA TAATCTCTAC
  K
  GCTTTGTCAC CTAGACTCTC CACATAATCT TAGACCATTA TCTCTCTAGT TCCCCATAAG
  GCTTTAACTA GGATTGCCTT TGAATTTTAC TACTGGTAAG TTTTTATTTC TTTCCAAACA
  GTTCTCCCTT CTAGCTGGCC AAGAGTCACA GAAACACCGT AGCACTGCTT TGACTGGCCT
  TTCTTTCCTA TGGATATTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50819825	NES13535524	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38147742					SNP	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819825	NES13535524	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42112820 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	Intron
Rr547822	regulatory region 547822	1834 bp distal