rs38151901 SNP Detail

Summary

• ID
  rs38151901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48589470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGAGATG ACAGGTAGAG
  ATTGTAGGGA TGAGCAGAGT GGCTTGGGTC AGACTGGGGT ATCCAAGCAT CTACACTGTC
  TGCCTGAAGC CGTACCCAGG TATAAAGGGA AGCAGTTGGG AATGTTCAAA AGATGACTGT
  GAAGTAAGAT GGATGCGTGC TACATCGTGA ACTAGGGAGT GTGAGCTAGC ATGTTCTTGG
  Y
  GGCATTGATG GCAACAGTGG CGGTGACATC AGCAGCAGCA GCATTGAGAT GCCCTGCAGG
  GGTTTATTCT GGGGCATTGG AAGAGTGTCC CACTGACTTA GGACATGTGG GAGAAAGTCT
  GCCTTCCAGG CATTGTTTTG GTTTGGTGAC AATGCTAGGG GTTGAGTTCC AGACCTTGCA
  CATGGTAAGC GCTCTGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51306593	NES13769666	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38151901					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51306593	NES13769666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48589470 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	within coordinates
Gm67224	predicted gene, 67224	within coordinates
Rr135554	regulatory region 135554	1470 bp distal
Rr135555	regulatory region 135555	1131 bp proximal
Tssr60741	transcription start site region 60741	1202 bp downstream
Tssr60742	transcription start site region 60742	1213 bp downstream
Zfp775	zinc finger protein 775	within coordinates