rs38152204 SNP Detail

Summary

• ID
  rs38152204
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11261455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTGTAG CCATGGTATG
  TGGGAGCTGC TAGCATCCAG GAGAGGTTTG CTGACTGCAT TGGCAAACTA TCAAGTGGCC
  CAAAGCCACA ACTTCTTGTT AAAACTCGGA AGACACACGT GATCCACTGG TTCTTAGCTA
  AGAAGATCAG AACGCCTTTA GTCAGCCACC CGCAGGGTCA TACAGACTGA GATGCCACAA
  M
  GAAGGCTGTT TTTATCTGGT GTCAGGAGTA CATGGTTGTA ACCCCAGCAC TCAGGGGGCT
  GAGCCATGAG GATTGCTAAA GGCTTGAGGT CAGCCTGGGA CAGACAGCAA GACCTAGTCT
  CAAAAAAAAA AAAAAAAAAA AAAAAAACAG GGAAAACCTG GTCTCAAAAT TCACTGCATT
  TTTAACTTAA AGATAACATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51941298	NES14960065	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38152204					SNP	C	A	A	A	A	A	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51941298	NES14960065	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11261455 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	118 bp downstream