rs38153325 SNP Detail

Summary

• ID
  rs38153325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57241359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTAATCA AGTTGATAAC TTGTAACAGG GTCCCAGACC
  TTAGTAGGCC TCCAGACCTT AGCACAAATG ACTCCACAAT GAAAGTACCA TCCAGTTTTT
  W
  GAAACCGGAC CGTGAAGCTT TGCGCTTCCT CTTTCCAGCC AGCGCCGAGC GATGGGCATC
  TCTCGGGACA ACTGGCACAA GCGCCGCAAG ACCGGGGGTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52020621	NES15041154	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38153325					SNP	A	A	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020621	NES15041154	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57241359 () rs orientation: forward

Symbol	Name	Function Class
Gm5121	predicted gene 5121	52 bp upstream
Tssr85298	transcription start site region 85298	within coordinates