rs38154936 SNP Detail

Summary

• ID
  rs38154936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87865687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTAAAG CAAGTTCGAT
  ACTAGATGCC TGCAATAGGA ATGTTAGGAT GGAGAGCCCA GACAGTAACC AGATAATCGC
  ATGCATAATT TTTTAATGTA ATATCTGCTG TCAGGGAAAC TCAGTCACAG GTTAGTTAGT
  GTTGGTTGTC TCCGACACAT AGATTCATTT AAGTTCTGGT TGCATAGATC AGTGCCAATT
  R
  TTGAACCCTA AAATGCTCAG AAAGAATGCT TAGGTGACTG TGAGAGAGCC TTGACGGCCT
  CTGGTAGATG ATAGAGACTT CCTTCTCTCT TCCTCGTGTT TGGCAGGTTT AGGGTCACAG
  TTCGGGGCTG TAACTCAGTT GATAGAGTGC TTGCTTAGCT TGGGTGAAGC CCTGTGTATG
  ATCCACAGTA CCATGTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51736705	NES14799929	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38154936					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51736705	NES14799929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87865687 () rs orientation: forward

Symbol	Name	Function Class
Copg1	coatomer protein complex, subunit gamma 1	within coordinates
Cpgi17684	CpG island 17684	466 bp distal
Rr399752	regulatory region 399752	799 bp downstream
Rr633771	regulatory region 633771	767 bp distal
Rr633772	regulatory region 633772	967 bp distal
Rr633773	regulatory region 633773	790 bp distal
Rr633774	regulatory region 633774	129 bp distal
Tssr57557	transcription start site region 57557	689 bp downstream