rs38155548 SNP Detail

Summary

• ID
  rs38155548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60727469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCAGC TCCCAATAGA
  ATGGTTTTCA TGGTGATTTT TCTTCTTCCC TTTTTTGCCT CTCTCCCATC TTGTTTAGAA
  CATATATTAG TATTTTATTT AGTATTTGCT TTTTTTCCTA CCGTGAACAC ACCGTTGTAG
  AACAAAATTC CCCCTGCGTG TAGTTTAGAA AGGGGTGTGG AAGCTTCCGA ATGACTGCTG
  Y
  GGTGTTTAAA GTGCCTGAGA TGCATCACCC ATTGTTTTGA TTCATCATTA ATTTGCCTTA
  AATTTTTTGT TTTGCATTTT AAAAAGTTAT ACTGAAGACA TAACTTGTAT GAATTTGCAG
  AGCCTGAATT TCTGTGGCAA AAACTTCAGA TTTACTGAGT AGAGAACAAA GGTATATTGT
  TTTAGACTCT TGGCTGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50715195	NES14255698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38155548					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50715195	NES14255698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60727469 () rs orientation: forward

Symbol	Name	Function Class
Gm9869	predicted gene 9869	1365 bp downstream
Rr196167	regulatory region 196167	269 bp distal
Rr201055	regulatory region 201055	1469 bp distal
Rr209918	regulatory region 209918	183 bp distal
Rr209919	regulatory region 209919	732 bp proximal
Rr209920	regulatory region 209920	1932 bp proximal
Rr383461	regulatory region 383461	733 bp upstream
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates