rs38156897 SNP Detail

Summary

• ID
  rs38156897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72717420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACTTCTG AGCTACCTTC
  CCAGCCCAAA ATTCCTCATC CTGGGGTAAT ATGGAGACTT ACTCAGCGTG AGTACCACTG
  TTCTGGAAGA CAACTGAACT TGAGAAAGGC TTGAGTCTCT GTACCAATGG GCAATATGCT
  TGCTCCATGT TTACATTGAC TGTACCATGC ACGAAAGATA AACTTTTGTT GTGTTAAGAA
  R
  CCTTCCGGAG GAGTTATCTT GTAAAGTGGT GACTCTGTCC CAACAAAGCC AACAATAATC
  ACTGCCTTTG AATCTAAAAC ACTCATTGAG GCCATTACTT AAACAGGTTT CCCGGTCCCA
  AAAGGCAGGA CAAGCTCCAA GTGCTAGACA GGCAGGGTTA TTCTGTCCAG GCTGGGAGAG
  CCCATGCAGA ATCCTCTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51693381	NES14824400	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38156897					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693381	NES14824400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72717420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17550	CpG island 17550	274 bp proximal
Gm67726	predicted gene, 67726	within coordinates
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates