rs38157596 SNP Detail

Summary

• ID
  rs38157596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88531995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTAAAGG TGTAGTTTTC
  TTCCCTCTGC AAGGCTGTCA GGCAGGTTTC CAGCAGAGCT GGGCCAAAGG ACCAGAATCA
  GGAACGCTGT CTGGGAGCTA CCCACCATCA CGGTATGGTA TCTAGGCACA TCCTCATCAC
  ACATCAGAGG GAAAGAGTGC TTCCCCTGCC ACTAGAGGAA TGAGACTGTG TGCTGCGTGC
  R
  TGCGACTGTG GCCATCAGTT CGTACTCAGT GGGACCCCAG GTCCTGACAA ATTGAGCTGG
  GCACGTGGCA GGGTTCTATA AACATGGATG CCAGTCACCT GGTTCATCCA TTCACCCACA
  CATCCAGTCT CTGAAAGGAG GTTCATGGCC TGAAGCTGAT AACTGCCAAG TACCTTGGTG
  TTGGAGACAG GAGGGTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50598717	NES14052530	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38157596					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598717	NES14052530	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88531995 () rs orientation: forward

Symbol	Name	Function Class
Rr667021	regulatory region 667021	939 bp distal
Rr667022	regulatory region 667022	438 bp distal
Tssr82324	transcription start site region 82324	965 bp upstream
Tssr82325	transcription start site region 82325	904 bp upstream
Zfp423	zinc finger protein 423	within coordinates