rs38158410 SNP Detail

Summary

• ID
  rs38158410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37420245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGCATTTT CCCCCAATGT GATTTTTCTT CTTCCCTTTT
  GAGGTTTCCT TTTATGGAAA CAGCCTTAGT TGGCTATAGT TTAACCATTT TACATACAGG
  R
  CTGTGGTTCC AGGTGGTTCT TACAAGGGGA CAGTCAGGTA TCAGGTCTAC AGAGAGTTTT
  GTCTTCTTCA GAGCGTGGTT TTGCTGTGTG AAGACAGAAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51603150	NES14852096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38158410					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603150	NES14852096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37420245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17302	CpG island 17302	835 bp distal
Creb3l2	cAMP responsive element binding protein 3-like 2	1162 bp upstream
Gm33318	predicted gene, 33318	within coordinates
Gm67278	predicted gene, 67278	within coordinates
Rr399613	regulatory region 399613	889 bp downstream
Rr628663	regulatory region 628663	1175 bp distal
Rr628664	regulatory region 628664	756 bp distal
Rr628665	regulatory region 628665	940 bp distal
Rr628666	regulatory region 628666	202 bp distal
Rr628667	regulatory region 628667	851 bp proximal
Tssr55612	transcription start site region 55612	786 bp downstream
Tssr55613	transcription start site region 55613	743 bp downstream
Tssr60356	transcription start site region 60356	1382 bp upstream
Tssr60357	transcription start site region 60357	1156 bp upstream
Tssr60358	transcription start site region 60358	1138 bp upstream