rs38161894 SNP Detail

Summary

• ID
  rs38161894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128046869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACTAAG GACAGAAAGC
  TGACCATGAG CACGATTCAG GGTCTTGGCC ACATTAGAGG CCCTTGGGCA CTTCGAGTCC
  TGAGTGGGTT AGCAGCTCTC CATCCCAAAG AGCAAAAGCA GGTGCCACTG GGCCCCGGAA
  ATCTGTCTGT AGTGTGTGGA TCACAGAGAT CCGACTCACA TCCACCAGGC TCAGCTTCTT
  Y
  GCCTCATAGT CCAGCAGCAG CCCCACCTTC TCTGGTTGCC CAATACCCTT AATTGGAGCT
  TTTTCGTTGG CCAACATGCT GTGCCACTTG CGCTGGGCAT AGGAGAACAC CCAGGAACGA
  TCATCAGCAC CAACGCAGCT GTCCCGGGAC ATGTCCACGT CTGCCACTCC TATCCGGAAC
  TGCTGGGAGC GCTTCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50948645	NES14143298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38161894					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948645	NES14143298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128046869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	618 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	996 bp downstream
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	1731 bp proximal
Rr402345	regulatory region 402345	710 bp upstream
Rr402346	regulatory region 402346	1804 bp upstream
Spryd4	SPRY domain containing 4	within coordinates
Tssr99849	transcription start site region 99849	766 bp downstream
Tssr99850	transcription start site region 99850	788 bp downstream