rs38163031 SNP Detail

Summary

• ID
  rs38163031
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145877999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTGAGTGT AGCACACCAT CCTGAGTGGA AACGGAACGT
  GTGCTTTCTG TTCTGCCTCT GACTTAGTGA CTTTAATCTG TGCGCTGCAA TTTTCTCACT
  S
  GTGTACAGAA AAAAATGTAA GGCAAATGCT GAGTCTCCTT AAGTGCCTCT GTAGGTACAC
  AGCAGACAAT AATTAGCTTA GATTCTGAGG GAACAGCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51464099	NES13986214	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	C	G	G		C	C	C		G
ss322075146	CHEV_6_145880793	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38163031					SNP	G	G	C	G	G	C	G	G	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51464099	NES13986214	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145877999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1759 bp proximal
Rr641246	regulatory region 641246	430 bp proximal
Rr641247	regulatory region 641247	1478 bp proximal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1840 bp upstream
Tssr59565	transcription start site region 59565	1864 bp upstream