rs38163115 SNP Detail

Summary

• ID
  rs38163115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATATGTTT TAATGGCCAC GGTTTTGTAA GACATTTGGT
  CCTTTGTTTT CCCAGTTATT ACTCGATTGT AATTTTATAT CGCCAGCAAT GGACTGAAAC
  R
  GTCCGCAACC TCTTCTTTAC AACTGGGTGA CCTCGCGGCT GTGCCAGCCA TTTGGCGTTC
  ACCCTGCCGC TAAGGGCCAT GTGAACCCCC GCGGTAGCAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676686	NES14820434	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38163115					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676686	NES14820434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701866 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1564 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1553 bp upstream
Igkj2	immunoglobulin kappa joining 2	1928 bp downstream
Igkj3	immunoglobulin kappa joining 3	1622 bp downstream
Igkj4	immunoglobulin kappa joining 4	1297 bp downstream
Igkj5	immunoglobulin kappa joining 5	959 bp downstream
Rr158	regulatory region 158	1069 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	253 bp upstream
Rr399685	regulatory region 399685	665 bp upstream
Rr399686	regulatory region 399686	1629 bp upstream
Tssr1880	transcription start site region 1880	1968 bp upstream
Tssr56953	transcription start site region 56953	1335 bp downstream
Tssr56954	transcription start site region 56954	1203 bp downstream
Tssr56955	transcription start site region 56955	982 bp downstream
Tssr56956	transcription start site region 56956	926 bp upstream
Tssr56957	transcription start site region 56957	1548 bp upstream
Tssr56958	transcription start site region 56958	1595 bp upstream
Tssr56959	transcription start site region 56959	1613 bp upstream
Tssr56960	transcription start site region 56960	1636 bp upstream
Tssr56961	transcription start site region 56961	1650 bp upstream
Tssr56962	transcription start site region 56962	1658 bp upstream
Tssr56963	transcription start site region 56963	1707 bp upstream
Tssr56964	transcription start site region 56964	1722 bp upstream
Tssr56965	transcription start site region 56965	1728 bp upstream
Tssr56966	transcription start site region 56966	1739 bp upstream
Tssr56967	transcription start site region 56967	1754 bp upstream
Tssr56968	transcription start site region 56968	1778 bp upstream
Tssr56969	transcription start site region 56969	1814 bp upstream
Tssr56970	transcription start site region 56970	1827 bp upstream
Tssr56971	transcription start site region 56971	1847 bp upstream
Tssr56972	transcription start site region 56972	1873 bp upstream
Tssr56973	transcription start site region 56973	1911 bp upstream
Tssr56974	transcription start site region 56974	1943 bp upstream
Tssr56975	transcription start site region 56975	1976 bp upstream
Tssr61321	transcription start site region 61321	1600 bp downstream
Tssr61322	transcription start site region 61322	1765 bp downstream
Tssr61323	transcription start site region 61323	1780 bp downstream
Tssr61324	transcription start site region 61324	1870 bp downstream
Tssr61325	transcription start site region 61325	1936 bp downstream
Tssr61326	transcription start site region 61326	1971 bp downstream
Tssr61327	transcription start site region 61327	1985 bp downstream