rs38163754 SNP Detail

Summary

• ID
  rs38163754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83105245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTCTGCTT AGTTGATCAG TACCCAGGAC ATGTTCTTTG
  CACTTTTTCT TTCAATTTTT ATTATCTTTA TAATTTTCCA ACAACAAAAA AATGACTGAA
  R
  AAGACAGGAA TTAACTTTCT GTTTTGGATT CTTGTAAAGT TATTCTTCTA ATAAGCCTGG
  TCACTTCTAT CACCTCCCTT ACCTTGTCTA CTGTCAATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss51971144	NES14983039	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G		A	G	A
ss145303771	ENSMUSSNP2361679	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss322735847	CHEV_8_84902515	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs38163754					SNP	G	G	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971144	NES14983039	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83105245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			438 bp downstream
Tssr81958	transcription start site region 81958			455 bp downstream
Tssr81959	transcription start site region 81959			1464 bp downstream
Tssr81960	transcription start site region 81960			1649 bp downstream
Tssr81961	transcription start site region 81961			1685 bp downstream