rs38163818 SNP Detail

Summary

• ID
  rs38163818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118055952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCACACA TGTTTACCCA
  CGTCAGCATC TGAGCTGTCT CAAAAGTCTA AGAAAGGAGA CAGCTCTCTT AGGTCTAGTA
  CACTTAGACC GTGTGCTAAG CCGGTCAATT TCTTTGGCTT TTAGGGAGTG ATATTTCTCG
  GGGTGGGTGG GGGACCCAAT TGCATTGAAC CTTCAAGGAG CGCATGTGAG GTTTTGGTGA
  Y
  TGACTCGGGC TTAGGAATGA ACCCCACTCA CTGGCTTCTG GCTGGGTAGA GATGCAGCTT
  GTGCAGTCTG CTAATGGCAG CAGTTAGACA CATTGTTTTT AACCGGCTCA CATCCCCTTC
  CCCCAGAAAC AAGTTCGATG TCTGGCTGCT TCACATCTGT GCCAACATTT GTCGTTGTCT
  ATCTCCTGCT TTAGCCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51982242	NES14998174	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38163818					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51982242	NES14998174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118055952 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Tssr79599	transcription start site region 79599	335 bp downstream
Tssr79600	transcription start site region 79600	1183 bp upstream