rs38165295 SNP Detail

Summary

• ID
  rs38165295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116744215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGCCT GTATGAGTTC
  TTAGGGAATC AGTTCTCAAC CTCTGGGTCG TGACCCACTT TCACAGTGAC CCCATTCACA
  GGGGTCGCAT ATCAGATATT TACATCATGA TCATAACAGT AGCACAATTA TAGTTATGAA
  GTAACAACAA CATGAGGAAC TGTATTAAAG GGTTAGAGCA TTAGGAAGGT TGAGAACCAC
  Y
  GCCTTAGGGG ACCTGCGTTT TACTGTAACT ACTAACGGCC TTGCCTGAAA CGAGGGTTTC
  TGATGGTTCA GTGACCCTGC TAGTGGCCAG GACCTGCCCT GGCTTTCTGT GTCTCTTTCC
  CTCCAGTCCT CTCCAGTGGC TCTCCTGGTC ATCTCCTCAT TTGCATCTAT GGATCGTTCT
  GGGGCTTACA GGAGCTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51858859	NES14881252	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38165295					SNP	C	C	T	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51858859	NES14881252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116744215 () rs orientation: forward

Symbol	Name	Function Class
Gm22882	predicted gene, 22882	1602 bp upstream
Rr637250	regulatory region 637250	511 bp proximal
Rr637251	regulatory region 637251	636 bp proximal