rs38165911 SNP Detail

Summary

• ID
  rs38165911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74604808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGCTT TACAAGGACT
  TCCAGAAAAA CTTCAGGGGC CTCCCATGAT GAGGGGAGAG GGGGAAGGGT GGGGGCTAAT
  GGCCTGGACA GAAAGTCTCT TGGCAGAAAT GGTGGGATGA TGGTGCAGGC TGTGTGGGGA
  CCCAGATGGT CAGGGATCCG TGGTCAGAAA AGGGGATCCC AGTTCTGTCC CACGCAGATC
  Y
  TACTGACCAA TCTCCAGGGA GTAGAGCGTA GTCTTGCACA TGGTTTCATT GATGTGGCAG
  TGGGTGGTGG TGACACAGTT GGATGCACTC ACAGGATTCG CACAGGTGTA GCACTGTAAG
  GCCATAGCTA GGAGAGGAGG GATGAGAGGG CAGTGAACAG GCCTTCCTGT CTCAAAAGCC
  CAAAATGTCT TCACCCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51714861	NES14563501	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38165911					SNP	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51714861	NES14563501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74604808 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	1922 bp upstream
Lypd2	Ly6/Plaur domain containing 2	within coordinates
Tssr134735	transcription start site region 134735	1333 bp downstream
Tssr134736	transcription start site region 134736	1355 bp downstream
Tssr134737	transcription start site region 134737	1399 bp downstream
Tssr134738	transcription start site region 134738	1801 bp downstream