rs38167347 SNP Detail

Summary

• ID
  rs38167347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40346191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGATCT CCCAAGCTTG
  GCACTAAATG ACACCAACAT AAAGATCCAT CCTTCCCGGA AACTTAAAAC AGAGAGGGAG
  AAGGAGAAGC GGTGGGATTG TGAGCACCTA CCAGGGACCA GGATCCTTGG ATTGGAGAAC
  AGTTTCCCTT TACTTTTTTA TCTTCTAACC TGCCTACAAG GGCGGGAACG ATCATAATCA
  Y
  AAACTTCTGT GGGAGGAATC TAGTGATGCA AAGCAGCCTG AGGGAAGGAA ATCTGTCCTA
  GAGGGGAACT GTTCTCCAAG GAAGCAGACG AGAAACTTCT ACCAGAACAC AAGTCAAACC
  CAGCTAGGCA TCAATATGGA CTGGTGAGGA AGAGGGAGGG GAGGGCTTCT TACTAAGAAT
  AGAGTACATA CCATCTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677672	NES14011105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38167347					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677672	NES14011105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40346191 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	1142 bp distal
Tssr88924	transcription start site region 88924	134 bp downstream
Tssr88925	transcription start site region 88925	206 bp downstream
Tssr88926	transcription start site region 88926	250 bp downstream
Tssr88927	transcription start site region 88927	261 bp downstream
Tssr88928	transcription start site region 88928	338 bp downstream