rs38168766 SNP Detail

Summary

• ID
  rs38168766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35702237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTTTAG TCACTTCTGA
  GGCACTGAGG CTCAGCAGAC TGCAGGTTGA ACTAGTAAAT ATGTGATATT AAGAAGTTGC
  TCCAGTCCTC TCACTTAGAC TTCAGCTCTA AGCACATCTC TATGGTGTTA GCTGTCTGTG
  TAATGCATTG CTGCGAACAG ATAGGGAAAT GCACTGAAGT CATCTAAGAA GTAAACTATC
  Y
  GAGGACATGC TTTTGTAGCT ATTGAAAATC TTATATTGAA ACCCACTGAT GGTGAAACTG
  TAGATCTCCT GTGATTTAAG TACCATCTGG TTGTGCTCAT GACTTTAAAG CTGTTATCTC
  CACATAAAAT TTCAGAGTCC TATATTTTTT TCCACCAAAC TATCCATTTT TAAGCCACAA
  ATGTTTTCCC ATCTCTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51633322	NES14588589	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38168766					SNP	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633322	NES14588589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35702237 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	within coordinates
Rr309492	regulatory region 309492	673 bp distal
Vps13b	vacuolar protein sorting 13B	within coordinates