rs38170175 SNP Detail

Summary

• ID
  rs38170175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97874748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGAACC TGCTGTTGCC
  CTCGGCCCTC ATCTCTACAT CATTGGAGCC CTGGATGAGC AAGGCCTTCT TGAGGTTGCC
  AGCCGCTTCG TCCAGGTAGG CGATGCTGTT CTTACAGTGG TAGGTGATGT TCTGGGAGCC
  CTCAGTGGAC AGTAGACGGA GGAAAGTCAT CTGGACGTTA GCGGTGTTGG GAGCCAGGTT
  K
  CCATCGCCAT AGCTGAACTG TGGGGCAGAG GGGCGAGGGT TGTGAGACCA GGGGCCTAGC
  ATCTGCTGGG ATCAGAGGCT AACAGTACAT TCATCTGATA GGGGCTCAGA GCATCAGATG
  GGCCCTGGGG CAGGTGTGGA GCAAGCTCAG AGGACATCTT CTCTCGCTCT AATGGGGAAA
  ATACTTTCTC CTCTTTCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763548	NES14551339	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38170175					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763548	NES14551339	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97874748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			35 bp distal
Tssr4707	transcription start site region 4707			21 bp downstream
Tssr132910	transcription start site region 132910			1237 bp downstream
Tssr136189	transcription start site region 136189			1180 bp upstream
Tssr136190	transcription start site region 136190			1150 bp upstream
Tssr136191	transcription start site region 136191			946 bp upstream
Tssr136192	transcription start site region 136192			816 bp upstream
Tssr136193	transcription start site region 136193			799 bp upstream
Tssr136194	transcription start site region 136194			748 bp upstream
Tssr136195	transcription start site region 136195			725 bp upstream
Tssr136196	transcription start site region 136196			713 bp upstream
Tssr136197	transcription start site region 136197			695 bp upstream
Tssr136198	transcription start site region 136198			171 bp upstream
Tssr136199	transcription start site region 136199			132 bp upstream
Tssr136200	transcription start site region 136200			107 bp upstream
Tssr136201	transcription start site region 136201			51 bp upstream
Tssr136202	transcription start site region 136202			within coordinates
Tssr136203	transcription start site region 136203			410 bp downstream
Tssr136204	transcription start site region 136204			503 bp downstream
Tssr136205	transcription start site region 136205			966 bp downstream
Tssr136206	transcription start site region 136206			1005 bp downstream
Tssr136207	transcription start site region 136207			1035 bp downstream