rs38170833 SNP Detail

Summary

• ID
  rs38170833
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:128341143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTACAAGA AGGATGGAAA
  AAAAGAGGCC ATGTGCCAGG AAGTATCATT CAGTGGTACT CATGTCAATG CCTACTAAAG
  AAAAATCGTT CTTAAACATA TATAACTATT CTGTATATCA ACTTATAATA ATTGGAAAAT
  TGCCATTTTT AAGATTGTCT GAAATGCCCT TCATTACAGG ATTTTGGCAT GTCATTTAAA
  K
  GAGGGTTAGC AAGTAAATAA ACAAATTCTT ATTGTACGTG AACATACACC AAAAATATGT
  TAAATTCTTT AAATTATGCT CTAAAGACTT GAGGCCCCAG GGAGTGGTGT GTGGGTGGTA
  GCATCCTCTT GGAGATGGGA AGAAGGAATG GGATGAGGAA CTGTGGCAGG GGTGACCGGG
  TGGGTGGCTG ACACCCAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51621344	NES14658748	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38170833					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51621344	NES14658748	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:128341143 () rs orientation: forward

Symbol	Name	Function Class
Rr497	regulatory region 497	within coordinates
Rr584942	regulatory region 584942	105 bp distal